PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013942.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family E2F/DP
Protein Properties Length: 264aa    MW: 28112.1 Da    PI: 4.626
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013942.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP58.41.1e-18671292971
     E2F_TDP  29 evakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  va+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Do013942.1  67 AVADELVAEfsdpninidspdpdnpsaqqyDEKNIRRRVYDALNVLMAMGIISK-DKKEIQWIG 129
                 69****************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013728.9E-2139129IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.0E-1764129IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-2765135IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.53E-1366130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011382.6E-42136262IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.15E-20136213No hitNo description
PfamPF087811.1E-15165229IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVSGAGPSGG PAHSGSTGAG GGSPSDRGGA APSASASVST PASESTVARR LNGLDLQADD  60
APSSQPAVAD ELVAEFSDPN INIDSPDPDN PSAQQYDEKN IRRRVYDALN VLMAMGIISK  120
DKKEIQWIGL PKTSMNDIEE LKTEIVGLKG RIDKKSAYLQ DLQDQTRPHA TVEVEISEDM  180
QLVHFDFNST PFELQDDSFV LKAMGLSGKE ETDGTQAPVA NGGECSSTLN NYWHQSPQPA  240
RSRVLLPNSP PVPGILKGRV KHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-21621342893PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365661e-111BT036566.1 Zea mays full-length cDNA clone ZM_BFb0123L22 mRNA, complete cds.
GenBankBT0410801e-111BT041080.1 Zea mays full-length cDNA clone ZM_BFc0172H21 mRNA, complete cds.
GenBankEU9752751e-111EU975275.1 Zea mays clone 486268 transcription factor Dp-1 mRNA, complete cds.
GenBankHQ8587671e-111HQ858767.1 Zea mays clone UT1683 E2F-DP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983025.11e-170PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY26e-62DPB_ARATH; Transcription factor-like protein DPB
TrEMBLK4AC691e-170K4AC69_SETIT; Uncharacterized protein
STRINGSi036476m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.22e-57Transcription factor DP